GT-Finder: Classify the family of glucose transporters with pre-trained BERT language models SMA Shah, SW Taju, QT Ho, YY Ou Computers in biology and medicine 131, 104259, 2021 | 35 | 2021 |
TRP-BERT: Discrimination of transient receptor potential (TRP) channels using contextual representations from deep bidirectional transformer based on BERT SMA Shah, YY Ou Computers in Biology and Medicine 137, 104821, 2021 | 23 | 2021 |
ActTRANS: Functional classification in active transport proteins based on transfer learning and contextual representations SW Taju, SMA Shah, YY Ou Computational Biology and Chemistry 93, 107537, 2021 | 8 | 2021 |
DeepSIRT: a deep neural network for identification of sirtuin targets and their subcellular localizations SMA Shah, SW Taju, BB Dlamini, YY Ou Computational Biology and Chemistry 93, 107514, 2021 | 7 | 2021 |
Identification of efflux proteins based on contextual representations with deep bidirectional transformer encoders SW Taju, SMA Shah, YY Ou Analytical biochemistry 633, 114416, 2021 | 3 | 2021 |
Disto-TRP: An approach for identifying transient receptor potential (TRP) channels using structural information generated by AlphaFold SMA Shah, YY Ou Gene 871, 147435, 2023 | 2 | 2023 |
mCNN-glucose: Identifying families of glucose transporters using a deep convolutional neural network based on multiple-scanning windows SMA Shah, M Rafi, MS Malik, SA Malik, YY Ou International Journal of Biological Macromolecules, 139522, 2025 | | 2025 |
MCNN-AAPT: accurate classification and functional prediction of amino acid and peptide transporters in secondary active transporters using protein language models and multi … MS Malik, VT Le, SMA Shah, YY Ou Journal of Biomolecular Structure and Dynamics, 1-10, 2024 | | 2024 |