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Mikel HernaezCenter for Applied Medical Research (CIMA), University of NavarraVerified email at unav.es
Tsachy WeissmanProfessor of Electrical Engineering at Stanford UniversityVerified email at stanford.edu
Shubham ChandakSr. Applied Scientist, Amazon AWS S3Verified email at amazon.com
Kedar TatwawadiStanford UniversityVerified email at stanford.edu
Pablo SmircichIIBCE, MEC / F. de ciencias. Universidad de la República. UruguayVerified email at fcien.edu.uy
Gadiel SeroussiResearcher, Gadiel Seroussi ConsultingVerified email at ieee.org
Mohit GoyalEngineer at GoogleVerified email at google.com
Jose Sotelo-SilveiraGenomics Department IIBCE. DBCM, School of Sciences, UdelaR.Verified email at iibce.edu.uy
Kartik VenkatGraduate Student, Stanford UniversityVerified email at alumni.stanford.edu
Alexandros ManolakosSenior Staff Systems Engineer, WR&D Qualcomm Inc. San Diego, CAVerified email at stanford.edu
Guillermo Dufort y ÁlvarezFacultad de Ingeniería, Universidad de la República, UruguayVerified email at fing.edu.uy
Albert NoAssociate Professor of Department of Artificial Intelligence at Yonsei UniversityVerified email at yonsei.ac.kr
Mainak ChowdhuryZaiNar | Stanford University | IIT KanpurVerified email at stanford.edu
Dinesh BharadiaAssociate Professor of ECE at UCSDVerified email at ucsd.edu
Olivier GevaertStanford UniversityVerified email at stanford.edu
Rachel GoldfederStanford UniversityVerified email at stanford.edu
Euan A. AshleyChair, Department of Medicine, Stanford UniversityVerified email at stanford.edu
Greg MalysaTimesysVerified email at timesys.com
Milind RaoAmazonVerified email at amazon.com
Pedro M CrespoProfessor Electrical Eng., University of NavarraVerified email at tecnun.es

idoia ochoa

University of Navarra

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Computational Biology Compression Machine Learning


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Deepzip: Lossless data compression using recurrent neural networks M Goyal, K Tatwawadi, S Chandak, I Ochoa arXiv preprint arXiv:1811.08162, 2018	108	2018
SPRING: a next-generation compressor for FASTQ data S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman Bioinformatics 35 (15), 2674-2676, 2019	92	2019
Effect of lossy compression of quality scores on variant calling I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley Briefings in bioinformatics 18 (2), 183-194, 2017	85	2017
QVZ: lossy compression of quality values G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman Bioinformatics 31 (19), 3122-3129, 2015	82	2015
QualComp: a new lossy compressor for quality scores based on rate distortion theory I Ochoa, H Asnani, D Bharadia, M Chowdhury, T Weissman, G Yona BMC bioinformatics 14, 1-16, 2013	67	2013
Genomic data compression M Hernaez, D Pavlichin, T Weissman, I Ochoa Annual Review of Biomedical Data Science 2 (1), 19-37, 2019	60	2019
FaStore: a space-saving solution for raw sequencing data Ł Roguski, I Ochoa, M Hernaez, S Deorowicz Bioinformatics 34 (16), 2748-2756, 2018	59	2018
iDoComp: a compression scheme for assembled genomes I Ochoa, M Hernaez, T Weissman Bioinformatics 31 (5), 626-633, 2014	59	2014
DZip: Improved general-purpose loss less compression based on novel neural network modeling M Goyal, K Tatwawadi, S Chandak, I Ochoa 2021 data compression conference (DCC), 153-162, 2021	54	2021
Reference based genome compression BG Chern, I Ochoa, A Manolakos, A No, K Venkat, T Weissman 2012 IEEE Information Theory Workshop, 427-431, 2012	44	2012
CaMoDi: a new method for cancer module discovery A Manolakos, I Ochoa, K Venkat, AJ Goldsmith, O Gevaert BMC genomics 15, 1-10, 2014	25	2014
GTRAC: fast retrieval from compressed collections of genomic variants K Tatwawadi, M Hernaez, I Ochoa, T Weissman Bioinformatics 32 (17), i479-i486, 2016	22	2016
Aligned genomic data compression via improved modeling I Ochoa, M Hernaez, T Weissman Journal of bioinformatics and computational biology 12 (06), 1442002, 2014	21	2014
An introduction to MPEG-G, the new ISO standard for genomic information representation C Alberti, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ... bioRxiv, 426353, 2018	20	2018
ENANO: Encoder for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo, I Ochoa, Á Martín Bioinformatics 36 (16), 4506-4507, 2020	16	2020
A cluster-based approach to compression of quality scores M Hernaez, I Ochoa, T Weissman 2016 Data Compression Conference (DCC), 261-270, 2016	16	2016
RENANO: a REference-based compressor for NANOpore FASTQ files G Dufort y Álvarez, G Seroussi, P Smircich, J Sotelo-Silveira, I Ochoa, ... Bioinformatics 37 (24), 4862-4864, 2021	15	2021
Denoising of aligned genomic data I Fischer-Hwang, I Ochoa, T Weissman, M Hernaez Scientific reports 9 (1), 15067, 2019	15	2019
MassComp, a lossless compressor for mass spectrometry data R Yang, X Chen, I Ochoa BMC bioinformatics 20, 1-10, 2019	11	2019
GeneComp, a new reference-based compressor for SAM files R Long, M Hernaez, I Ochoa, T Weissman 2017 Data Compression Conference (DCC), 330-339, 2017	11	2017

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