ProtTrans and multi-window scanning convolutional neural networks for the prediction of protein-peptide interaction sites VT Le, ZJ Zhan, MS Malik, YY Ou Journal of Molecular Graphics and Modelling 130, 108777, 2024 | 4 | 2024 |
DeepPLM_mCNN: An approach for enhancing ion channel and ion transporter recognition by multi-window CNN based on features from pre-trained language models VT Le, MS Malik, YH Tseng, YC Lee, CI Huang, YY Ou Computational Biology and Chemistry 110, 108055, 2024 | 4 | 2024 |
MCNN_MC: Computational Prediction of Mitochondrial Carriers and Investigation of Bongkrekic Acid Toxicity Using Protein Language Models and Convolutional Neural Networks MS Malik, YY Chang, YC Liu, VT Le, YY Ou Journal of Chemical Information and Modeling 64 (24), 9125-9134, 2024 | 1 | 2024 |
ATP_mCNN: Predicting ATP binding sites through pretrained language models and multi-window neural networks VT Le, MS Malik, YJ Lin, YC Liu, YY Chang, YY Ou Computers in Biology and Medicine 185, 109541, 2025 | | 2025 |
MCNN-AAPT: accurate classification and functional prediction of amino acid and peptide transporters in secondary active transporters using protein language models and multi … MS Malik, VT Le, SMA Shah, YY Ou Journal of Biomolecular Structure and Dynamics, 1-10, 2024 | | 2024 |