| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 18947 | 2019 |
| Cardiorespiratory fitness as a predictor of intestinal microbial diversity and distinct metagenomic functions M Estaki, J Pither, P Baumeister, JP Little, SK Gill, S Ghosh, ... Microbiome 4, 1-13, 2016 | 509 | 2016 |
| QIIME 2 enables comprehensive end‐to‐end analysis of diverse microbiome data and comparative studies with publicly available data M Estaki, L Jiang, NA Bokulich, D McDonald, A González, T Kosciolek, ... Current protocols in bioinformatics 70 (1), e100, 2020 | 385 | 2020 |
| Fish oil attenuates omega-6 polyunsaturated fatty acid-induced dysbiosis and infectious colitis but impairs LPS dephosphorylation activity causing sepsis S Ghosh, D DeCoffe, K Brown, E Rajendiran, M Estaki, C Dai, A Yip, ... PloS one 8 (2), e55468, 2013 | 246 | 2013 |
| Clinical consequences of diet-induced dysbiosis YK Chan, M Estaki, DL Gibson Annals of Nutrition and Metabolism 63 (Suppl. 2), 28-40, 2013 | 228 | 2013 |
| Interplay between intestinal alkaline phosphatase, diet, gut microbes and immunity M Estaki, D DeCoffe, DL Gibson World Journal of Gastroenterology: WJG 20 (42), 15650, 2014 | 171 | 2014 |
| Probiotic supplementation and associated infant gut microbiome and health: a cautionary retrospective clinical comparison C Quin, M Estaki, DM Vollman, JA Barnett, SK Gill, DL Gibson Scientific reports 8 (1), 8283, 2018 | 129 | 2018 |
| Compositional and genetic alterations in Graves’ disease gut microbiome reveal specific diagnostic biomarkers Q Zhu, Q Hou, S Huang, Q Ou, D Huo, Y Vázquez-Baeza, C Cen, V Cantu, ... The ISME journal 15 (11), 3399-3411, 2021 | 60 | 2021 |
| A Mediterranean diet pattern improves intestinal inflammation concomitant with reshaping of the bacteriome in ulcerative colitis: a randomised controlled trial N Haskey, M Estaki, J Ye, RK Shim, S Singh, LA Dieleman, K Jacobson, ... Journal of Crohn's and Colitis 17 (10), 1569-1578, 2023 | 53 | 2023 |
| Candidate probiotic Lactiplantibacillus plantarum HNU082 rapidly and convergently evolves within human, mice, and zebrafish gut but differentially influences the … S Huang, S Jiang, D Huo, C Allaband, M Estaki, V Cantu, P Belda-Ferre, ... Microbiome 9, 1-17, 2021 | 52 | 2021 |
| EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets K Cantrell, MW Fedarko, G Rahman, D McDonald, Y Yang, T Zaw, ... mSystems 6 (2), e01216-20, 2021 | 45 | 2021 |
| High-intensity endurance training results in faster vessel-specific rate of vasorelaxation in type 1 diabetic rats JM Murias, A Dey, OA Campos, M Estaki, KE Hall, CWJ Melling, EG Noble PLoS One 8 (3), e59678, 2013 | 39 | 2013 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... Biotechniques 70 (3), 149-159, 2021 | 33 | 2021 |
| Fish oil supplementation reduces maternal defensive inflammation and predicts a gut bacteriome with reduced immune priming capacity in infants C Quin, DM Vollman, S Ghosh, N Haskey, M Estaki, J Pither, JA Barnett, ... The ISME Journal 14 (8), 2090-2104, 2020 | 27 | 2020 |
| Cover crop diversity as a tool to mitigate vine decline and reduce pathogens in vineyard soils A Richards, M Estaki, JR Úrbez-Torres, P Bowen, T Lowery, M Hart Diversity 12 (4), 128, 2020 | 25 | 2020 |
| Physical Activity Shapes the Intestinal Microbiome and Immunity of Healthy Mice but Has No Protective Effects against Colitis in MUC2−/− Mice M Estaki, DW Morck, S Ghosh, C Quin, J Pither, JA Barnett, SK Gill, ... mSystems 5 (6), 1-21, 2020 | 22 | 2020 |
| A Mediterranean-like fat blend protects against the development of severe colitis in the mucin-2 deficient murine model N Haskey, J Ye, M Estaki, AA Verdugo Meza, JA Barnett, M Yousefi, ... Gut Microbes 14 (1), 2055441, 2022 | 17 | 2022 |
| Swapping metagenomics preprocessing pipeline components offers speed and sensitivity increases G Armstrong, C Martino, J Morris, B Khaleghi, J Kang, J DeReus, Q Zhu, ... Msystems 7 (2), e01378-21, 2022 | 14 | 2022 |
| Individuals with substance use disorders have a distinct oral microbiome pattern T Kosciolek, TA Victor, R Kuplicki, M Rossi, M Estaki, G Ackermann, ... Brain, Behavior, & Immunity-Health 15, 100271, 2021 | 14 | 2021 |
| Impact of vaginal estrogen on the urobiome in postmenopausal women with recurrent urinary tract infection CE Jung, M Estaki, J Chopyk, BC Taylor, A Gonzalez, D McDonald, J Shin, ... Urogynecology 28 (1), 20-26, 2022 | 11 | 2022 |
Deanna L. GibsonProfessor, University of British Columbia Okanagan; Co-founder and CSO Melius MicroBiomicsVerified email at ubc.ca
