Follow
Hongyu Shi
Title
Cited by
Cited by
Year
Improved prediction of immune checkpoint blockade efficacy across multiple cancer types
D Chowell, SK Yoo, C Valero, A Pastore, C Krishna, M Lee, D Hoen, ...
Nature biotechnology 40 (4), 499-506, 2022
1762022
Ovarian cancer mutational processes drive site-specific immune evasion
I Vázquez-García, F Uhlitz, N Ceglia, JLP Lim, M Wu, N Mohibullah, ...
Nature 612 (7941), 778-786, 2022
1352022
Tim-4+ cavity-resident macrophages impair anti-tumor CD8+ T cell immunity
A Chow, S Schad, MD Green, MD Hellmann, V Allaj, N Ceglia, G Zago, ...
Cancer Cell 39 (7), 973-988. e9, 2021
1312021
Clinical sequencing of soft tissue and bone sarcomas delineates diverse genomic landscapes and potential therapeutic targets
BA Nacev, F Sanchez-Vega, SA Smith, CR Antonescu, E Rosenbaum, ...
Nature Communications 13 (1), 3405, 2022
1152022
Single-cell genomic variation induced by mutational processes in cancer
T Funnell, CH O’Flanagan, MJ Williams, A McPherson, S McKinney, ...
Nature 612 (7938), 106-115, 2022
692022
Classifying gastric cancer using FLORA reveals clinically relevant molecular subtypes and highlights LINC01614 as a biomarker for patient prognosis
Y Chen, WY Cheng, H Shi, S Huang, H Chen, D Liu, W Xu, J Yu, J Wang
Oncogene 40 (16), 2898-2909, 2021
342021
Altered host protease determinants for SARS-CoV-2 Omicron
JFW Chan, X Huang, B Hu, Y Chai, H Shi, T Zhu, TTT Yuen, Y Liu, H Liu, ...
Science Advances 9 (3), eadd3867, 2023
232023
A randomized phase II trial of adjuvant hepatic arterial infusion and systemic therapy with or without panitumumab after hepatic resection of KRAS wild-type colorectal cancer
NE Kemeny, JF Chou, M Capanu, WK Chatila, H Shi, F Sanchez-Vega, ...
Annals of surgery 274 (2), 248-254, 2021
92021
Allele-specific transcriptional effects of subclonal copy number alterations enable genotype-phenotype mapping in cancer cells
H Shi, MJ Williams, G Satas, AC Weiner, A McPherson, SP Shah
Nature Communications 15 (1), 2482, 2024
7*2024
Single-cell DNA replication dynamics in genomically unstable cancers
AC Weiner, MJ Williams, H Shi, I Vázquez-García, S Salehi, N Rusk, ...
bioRxiv, 2023
62023
Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes
M Kim, AN Gorelick, I Vàzquez-García, MJ Williams, S Salehi, H Shi, ...
Nature Genetics, 1-11, 2024
42024
Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer
AW McPherson, I Vazquez-Garcia, MA Myers, M Zatzman, DH Al-Rawi, ...
bioRxiv, 2024.07. 11.602772, 2024
12024
Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data
AC Weiner, MJ Williams, H Shi, I Vázquez-García, S Salehi, N Rusk, ...
Nature Communications 15 (1), 8512, 2024
2024
Abstract PR012: Evolutionary dynamics of whole-genome doubling in ovarian cancer
I Vázquez-García, M Myers, MJ Williams, SS Freeman, J Li, H Shi, ...
Cancer Research 84 (3_Supplement_2), PR012-PR012, 2024
2024
Tracking clonal evolution of drug resistance in ovarian cancer patients by exploiting structural variants in cfDNA
MJ Williams, I Vázquez-García, G Tam, M Wu, N Varice, E Havasov, H Shi, ...
bioRxiv, 2024.08. 21.609031, 2024
2024
Transient chromosomal instability as a driver of ovarian cancer genome evolution
I Vazquez-Garcia, F Uhlitz, MJ Williams, J Li, H Shi, S Freeman, M Myers, ...
Cancer Research 83 (7_Supplement), 102-102, 2023
2023
Targeted sequencing of 2,138 bone and soft tissue sarcomas reveals commonly altered pathways, subtype-independent genetic clusters, and potential therapeutic targets.
BA Nacev, F Sanchez-Vega, S Smith, C Antonescu, E Rosenbaum, H Shi, ...
CLINICAL CANCER RESEARCH 28 (18), 9-10, 2022
2022
The system can't perform the operation now. Try again later.
Articles 1–17