Asa Ben-Hur
Asa Ben-Hur
Computer Science, Colorado State University
Verified email at - Homepage
Cited by
Cited by
Support vector clustering
A Ben-Hur, D Horn, HT Siegelmann, V Vapnik
Journal of machine learning research 2 (Dec), 125-137, 2001
A user’s guide to support vector machines
A Ben-Hur, J Weston
Data mining techniques for the life sciences, 223-239, 2010
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Protein interface prediction using graph convolutional networks
AM Fout, J Byrd, B Shariat, A Ben-Hur
Advances in Neural Information Processing Systems (NIPS), 2017
Result analysis of the nips 2003 feature selection challenge
I Guyon, S Gunn, A Ben-Hur, G Dror
Advances in neural information processing systems 17, 2004
A stability based method for discovering structure in clustered data
A Ben-Hur, A Elisseeff, I Guyon
Pacific Symposium on Biocomputing 2002, 6-17, 2001
Support vector machines and kernels for computational biology
A Ben-Hur, CS Ong, S Sonnenburg, B Schölkopf, G Rätsch
PLoS computational biology 4 (10), e1000173, 2008
Kernel methods for predicting protein–protein interactions
A Ben-Hur, WS Noble
Bioinformatics 21 (suppl_1), i38-i46, 2005
A survey of the sorghum transcriptome using single-molecule long reads
SE Abdel-Ghany, M Hamilton, JL Jacobi, P Ngam, N Devitt, F Schilkey, ...
Nature communications 7 (1), 11706, 2016
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17, 1-19, 2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20, 1-23, 2019
Genotypic predictors of human immunodeficiency virus type 1 drug resistance
SY Rhee, J Taylor, G Wadhera, A Ben-Hur, DL Brutlag, RW Shafer
Proceedings of the National Academy of Sciences 103 (46), 17355-17360, 2006
Large-scale identification of yeast integral membrane protein interactions
JP Miller, RS Lo, A Ben-Hur, C Desmarais, I Stagljar, WS Noble, S Fields
Proceedings of the National Academy of Sciences 102 (34), 12123-12128, 2005
Detecting stable clusters using principal component analysis
A Ben-Hur, I Guyon
Functional Genomics: Methods and Protocols, 159-182, 2003
RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data
CD Broeckling, FA Afsar, S Neumann, A Ben-Hur, JE Prenni
Analytical chemistry 86 (14), 6812-6817, 2014
Choosing negative examples for the prediction of protein-protein interactions
A Ben-Hur, WS Noble
BMC bioinformatics 7 (Suppl 1), S2, 2006
Remote homology detection: a motif based approach
A Ben-Hur, D Brutlag
Bioinformatics 19 (suppl_1), i26-i33, 2003
Universality in sandpile models
A Ben-Hur, O Biham
Physical Review E 53 (2), R1317, 1996
A support vector clustering method
A Ben-Hur, D Horn, HT Siegelmann, V Vapnik
Proceedings 15th International Conference on Pattern Recognition. ICPR-2000 …, 2000
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
MF Rogers, J Thomas, ASN Reddy, A Ben-Hur
Genome biology 13, 1-17, 2012
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