John Kececioglu

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Dan DeBlasioAssistant Teaching Professor, Computational Biology Department, Carnegie Mellon UniversityVerified email at cs.cmu.edu
David SankoffUniversity of OttawaVerified email at uottawa.ca
Richard SnodgrassProfessor of Computer Science, University of ArizonaVerified email at email.arizona.edu
Abhijit SahaNSF's National Optical-Infrared Astronomy Rsearch Laboratory (NOIRLab)Verified email at noao.edu
Thomas MathesonNOIRLabVerified email at noirlab.edu
Travis WheelerAssociate Professor, Dept Pharmacy Practice & Science, U. ArizonaVerified email at traviswheeler.com
Gautham NarayanUniversity of Illinois at Urbana-ChampaignVerified email at illinois.edu
Petra MutzelProfessorin für Informatik, Universität BonnVerified email at cs.uni-bonn.de
Spencer KriegerCarnegie Mellon UniversityVerified email at andrew.cmu.edu
R RaviCarnegie Mellon UnviersityVerified email at andrew.cmu.edu
Carlos ScheideggerPosit PBC (fka RStudio)Verified email at posit.co
Gene MyersMax-Planck Institute for Molecular Cell Biology & GeneticsVerified email at mpi-cbg.de
Stephen AltschulNCBI NLM NIHVerified email at nih.gov
Alejandro SchafferComputer Scientist, National Institutes of HealthVerified email at nih.gov
Saumya DebrayProfessor of Computer Science, University of ArizonaVerified email at cs.arizona.edu
Knut ReinertFU Berlin / MPI MolgenVerified email at fu-berlin.de
Kurt MehlhornProfessor of Computer Science, Max Planck Institute for Informatics, Saarland Informatics CampusVerified email at mpi-inf.mpg.de
Prof. Dr. Hans-Peter LenhofCenter for Bioinformatics, Saarland Informatics Campus, Saarland UniversityVerified email at bioinf.uni-sb.de
Christian CollbergProfessor of Computer Science, University of ArizonaVerified email at cs.arizona.edu
Ilias TagkopoulosProfessor, Computer Science and Genome Center, University of California, DavisVerified email at ucdavis.edu

John Kececioglu

Professor of Computer Science, The University of Arizona

Verified email at cs.arizona.edu - Homepage

Design and analysis of algorithms bioinformatics computational biology computational astronomy


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A tool for multiple sequence alignment DJ Lipman, SF Altschul, JD Kececioglu Proceedings of the National Academy of Sciences 86 (12), 4412-4415, 1989	781	1989
Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement J Kececioglu, D Sankoff Algorithmica 13 (1), 180-210, 1995	402	1995
Combinatorial algorithms for DNA sequence assembly JD Kececioglu, EW Myers Algorithmica 13 (1), 7-51, 1995	352	1995
Multiple alignment by aligning alignments TJ Wheeler, JD Kececioglu Bioinformatics 23 (13), i559-i568, 2007	308	2007
Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment SK Gupta, JD Kececioglu, AA Schäffer Journal of Computational Biology 2 (3), 459-472, 1995	284	1995
Dynamic path-based software watermarking C Collberg, E Carter, S Debray, A Huntwork, J Kececioglu, C Linn, ... Proceedings of the ACM SIGPLAN 2004 conference on Programming language …, 2004	228	2004
Exact and approximation algorithms for the inversion distance between two chromosomes J Kececioglu, D Sankoff Annual Symposium on Combinatorial Pattern Matching, 87-105, 1993	214	1993
The maximum weight trace problem in multiple sequence alignment J Kececioglu Annual Symposium on Combinatorial Pattern Matching, 106-119, 1993	192	1993
Of mice and men: Algorithms for evolutionary distances between genomes with translocation JD Kececiogluy, R Raviz Symposium on Discrete Algorithms 604, 613, 1995	167	1995
Efficient bounds for oriented chromosome inversion distance J Kececioglu, D Sankoff Annual Symposium on Combinatorial Pattern Matching, 307-325, 1994	146	1994
A branch-and-cut algorithm for multiple sequence alignment K Reinert, HP Lenhof, P Mutzel, K Mehlhorn, JD Kececioglu Proceedings of the first annual international conference on Computational …, 1997	97	1997
Steiner points in the space of genome rearrangements D Sankoff, G Sundaram, J Kececioglu International Journal of Foundations of Computer Science 7 (01), 1-9, 1996	94	1996
Reconstructing a history of recombinations from a set of sequences J Kececioglu, D Gusfield Discrete Applied Mathematics 88 (1-3), 239-260, 1998	87	1998
Exact and approximation algorithms for DNA sequence reconstruction. JD Kececioglu The University of Arizona., 1991	87	1991
A polyhedral approach to sequence alignment problems JD Kececioglu, HP Lenhof, K Mehlhorn, P Mutzel, K Reinert, M Vingron Discrete applied mathematics 104 (1-3), 143-186, 2000	77	2000
Aligning alignments exactly J Kececioglu, D Starrett Proceedings of the eighth annual international conference on Research in …, 2004	68	2004
The ANTARES astronomical time-domain event broker T Matheson, C Stubens, N Wolf, CH Lee, G Narayan, A Saha, A Scott, ... The Astronomical Journal 161 (3), 107, 2021	61	2021
HIV-1 Encodes a Sequence Overlappingenv gp41 With Highly Significant Similarity to Selenium-Dependent Glutathione Peroxidases EW Taylor, A Bhat, RG Nadimpalli, W Zhang, J Kececioglu JAIDS Journal of Acquired Immune Deficiency Syndromes 15 (5), 393-394, 1997	58	1997
Machine-learning-based Brokers for Real-time Classification of the LSST Alert Stream G Narayan, T Zaidi, MD Soraisam, Z Wang, M Lochner, T Matheson, ... The Astrophysical Journal Supplement Series 236 (1), 9, 2018	44	2018
Simple and fast inverse alignment J Kececioglu, E Kim Annual International Conference on Research in Computational Molecular …, 2006	41	2006

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