| miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments M Wen, Y Shen, S Shi, T Tang BMC bioinformatics 13, 1-10, 2012 | 473 | 2012 |
| In vivo mapping of eukaryotic RNA interactomes reveals principles of higher-order organization and regulation JGA Aw, Y Shen, A Wilm, M Sun, XN Lim, KL Boon, S Tapsin, YS Chan, ... Molecular cell 62 (4), 603-617, 2016 | 338 | 2016 |
| The birth and death of microRNA genes in Drosophila J Lu, Y Shen, Q Wu, S Kumar, B He, S Shi, RW Carthew, SM Wang, CI Wu Nature genetics 40 (3), 351-355, 2008 | 294 | 2008 |
| The phylogenetic analysis of tetraspanins projects the evolution of cell–cell interactions from unicellular to multicellular organisms S Huang, S Yuan, M Dong, J Su, C Yu, Y Shen, X Xie, Y Yu, X Yu, S Chen, ... Genomics 86 (6), 674-684, 2005 | 197 | 2005 |
| Evolution under canalization and the dual roles of microRNAs—A hypothesis CI Wu, Y Shen, T Tang Genome research 19 (5), 734-743, 2009 | 180 | 2009 |
| Suppression of endogenous gene silencing by bidirectional cytoplasmic RNA decay in Arabidopsis X Zhang, Y Zhu, X Liu, X Hong, Y Xu, P Zhu, Y Shen, H Wu, Y Ji, X Wen, ... Science 348 (6230), 120-123, 2015 | 176 | 2015 |
| Structure mapping of dengue and Zika viruses reveals functional long-range interactions RG Huber, XN Lim, WC Ng, AYL Sim, HX Poh, Y Shen, SY Lim, ... Nature communications 10 (1), 1408, 2019 | 125 | 2019 |
| Determination of isoform-specific RNA structure with nanopore long reads JGA Aw, SW Lim, JX Wang, FRP Lambert, WT Tan, Y Shen, Y Zhang, ... Nature biotechnology 39 (3), 336-346, 2021 | 101 | 2021 |
| Adaptive Evolution of Newly Emerged Micro-RNA Genes in Drosophila J Lu, Y Fu, S Kumar, Y Shen, K Zeng, A Xu, R Carthew, CI Wu Molecular biology and evolution 25 (5), 929-938, 2008 | 96 | 2008 |
| Zscan4c activates endogenous retrovirus MERVL and cleavage embryo genes W Zhang, F Chen, R Chen, D Xie, J Yang, X Zhao, R Guo, Y Zhang, ... Nucleic acids research 47 (16), 8485-8501, 2019 | 94 | 2019 |
| Genomic variation in rice: genesis of highly polymorphic linkage blocks during domestication T Tang, J Lu, J Huang, J He, SR McCouch, Y Shen, Z Kai, ... PLoS genetics 2 (11), e199, 2006 | 74 | 2006 |
| Genes “waiting” for recruitment by the adaptive immune system: the insights from amphioxus C Yu, M Dong, X Wu, S Li, S Huang, J Su, J Wei, Y Shen, C Mou, X Xie, ... The Journal of Immunology 174 (6), 3493-3500, 2005 | 70 | 2005 |
| The evolution of evolvability in microRNA target sites in vertebrates J Xu, R Zhang, Y Shen, G Liu, X Lu, CI Wu Genome research 23 (11), 1810-1816, 2013 | 69 | 2013 |
| New MicroRNAs in Drosophila—Birth, Death and Cycles of Adaptive Evolution Y Lyu, Y Shen, H Li, Y Chen, L Guo, Y Zhao, E Hungate, S Shi, CI Wu, ... PLoS genetics 10 (1), e1004096, 2014 | 57 | 2014 |
| Genome-wide misexpression of X-linked versus autosomal genes associated with hybrid male sterility X Lu, JA Shapiro, CT Ting, Y Li, C Li, J Xu, H Huang, YJ Cheng, ... Genome research 20 (8), 1097-1102, 2010 | 56 | 2010 |
| Characterization and comparative analyses of zebrafish intelectins: highly conserved sequences, diversified structures and functions B Lin, Z Cao, P Su, H Zhang, M Li, Y Lin, D Zhao, Y Shen, C Jing, S Chen, ... Fish & shellfish immunology 26 (3), 396-405, 2009 | 56 | 2009 |
| Genome-wide identification of natural RNA aptamers in prokaryotes and eukaryotes S Tapsin, M Sun, Y Shen, H Zhang, XN Lim, TT Susanto, SL Yang, ... Nature communications 9 (1), 1289, 2018 | 49 | 2018 |
| Identification of a regulatory pathway inhibiting adipogenesis via RSPO2 H Dong, W Sun, Y Shen, M Baláz, L Balázová, L Ding, M Löffler, ... Nature metabolism 4 (1), 90-105, 2022 | 48 | 2022 |
| Adverse interactions between micro-RNAs and target genes from different species T Tang, S Kumar, Y Shen, J Lu, ML Wu, S Shi, WH Li, CI Wu Proceedings of the National Academy of Sciences 107 (29), 12935-12940, 2010 | 42 | 2010 |
| Gene regulatory network stabilized by pervasive weak repressions: microRNA functions revealed by the May–Wigner theory Y Chen, Y Shen, P Lin, D Tong, Y Zhao, S Allesina, X Shen, CI Wu National science review 6 (6), 1176-1188, 2019 | 38 | 2019 |
