NiftyNet: a deep-learning platform for medical imaging E Gibson, W Li, C Sudre, L Fidon, DI Shakir, G Wang, Z Eaton-Rosen, ... Computer methods and programs in biomedicine 158, 113-122, 2018 | 671 | 2018 |
GIFT-Cloud: A data sharing and collaboration platform for medical imaging research T Doel, DI Shakir, R Pratt, M Aertsen, J Moggridge, E Bellon, AL David, ... computer methods and programs in biomedicine 139, 181-190, 2017 | 67 | 2017 |
Effective deep learning training for single-image super-resolution in endomicroscopy exploiting video-registration-based reconstruction D Ravì, AB Szczotka, DI Shakir, SP Pereira, T Vercauteren International journal of computer assisted radiology and surgery 13 (6), 917-924, 2018 | 46 | 2018 |
Effective deep learning training for single-image super-resolution in endomicroscopy exploiting video-registration-based reconstruction D Ravì, AB Szczotka, DI Shakir, SP Pereira, T Vercauteren International journal of computer assisted radiology and surgery 13 (6), 917-924, 2018 | 46 | 2018 |
Real-time mosaicing of fetoscopic videos using SIFT P Daga, F Chadebecq, DI Shakir, LCGP Herrera, M Tella, G Dwyer, ... Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and …, 2016 | 35 | 2016 |
Retrieval and registration of long-range overlapping frames for scalable mosaicking of in vivo fetoscopy L Peter, M Tella-Amo, DI Shakir, G Attilakos, R Wimalasundera, J Deprest, ... International journal of computer assisted radiology and surgery 13 (5), 713-720, 2018 | 27 | 2018 |
A Combined EM and Visual Tracking Probabilistic Model for Robust Mosaicking: Application to Fetoscopy M Tella-Amo, P Daga, F Chadebecq, S Thompson, DI Shakir, G Dwyer, ... Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2016 | 24 | 2016 |
Probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking: application to fetoscopy M Tella-Amo, L Peter, DI Shakir, J Deprest, D Stoyanov, JE Iglesias, ... Journal of Medical Imaging 5 (2), 021217, 2018 | 18 | 2018 |
Pruning strategies for efficient online globally consistent mosaicking in fetoscopy M Tella-Amo, L Peter, DI Shakir, J Deprest, D Stoyanov, T Vercauteren, ... Journal of Medical Imaging 6 (3), 035001, 2019 | 15 | 2019 |
Bruker2nifti: Magnetic Resonance Images converter from Bruker S Ferraris, DI Shakir, H van der Merwe, W Gsell, J Deprest, T Vercauteren Journal of Open Source Software 2 (16), 2017 | 11 | 2017 |
Detection models for freehand SPECT reconstruction A Hartl, DI Shakir, T Lasser, SI Ziegler, N Navab Physics in Medicine & Biology 60 (3), 1031, 2015 | 11 | 2015 |
Towards intra-operative PET for head and neck cancer: lymph node localization using high-energy probes DI Shakir, A Okur, A Hartl, P Matthies, SI Ziegler, M Essler, T Lasser, ... International Conference on Medical Image Computing and Computer-Assisted …, 2012 | 11 | 2012 |
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy AB Szczotka, DI Shakir, MJ Clarkson, SP Pereira, T Vercauteren IEEE transactions on medical imaging, 0 | 11 | |
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches AB Szczotka, DI Shakir, D Ravì, MJ Clarkson, SP Pereira, T Vercauteren International journal of computer assisted radiology and surgery 15 (7), 1167, 2020 | 10 | 2020 |
Acquisition models in intraoperative positron surface imaging F Monge, DI Shakir, F Lejeune, X Morandi, N Navab, P Jannin International journal of computer assisted radiology and surgery 12 (4), 691-703, 2017 | 10 | 2017 |
Ultrasonic needle tracking with dynamic electronic focusing SJ Mathews, DI Shakir, CA Mosse, W Xia, EZ Zhang, PC Beard, SJ West, ... Ultrasound in Medicine & Biology 48 (3), 520-529, 2022 | 9 | 2022 |
Freehand SPECT reconstructions using look up tables A Hartl, DI Shakir, R Kojchev, N Navab, SI Ziegler, T Lasser Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and …, 2012 | 8 | 2012 |
Medical-grade Sterilizable Target for Fluid-immersed Fetoscope Optical Distortion Calibration DI Nikitichev, DI Shakir, F Chadebecq, M Tella, J Deprest, D Stoyanov, ... JoVE (Journal of Visualized Experiments), e55298, 2017 | 6 | 2017 |
Acquisition model for iterative reconstruction of navigated beta-probe surface images DI Shakir, N Navab, SI Ziegler Proceedings of IEEE Nuclear Science Symposium and Medical Imaging Conference …, 2010 | 5 | 2010 |
Real-Time Ultrasonic Tracking of an Intraoperative Needle Tip with Integrated Fibre-Optic Hydrophone C Baker, M Xochicale, F Joubert, F Lin, S Mathews, DI Shakir, S Ourselin, ... 2021 IEEE International Ultrasonics Symposium (IUS), 1-4, 2021 | 4 | 2021 |