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Pengfan Zhang
Pengfan Zhang
Innovative Genomics Institute
在 berkeley.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
The structure and function of the global citrus rhizosphere microbiome
J Xu, Y Zhang, P Zhang, P Trivedi, N Riera, Y Wang, X Liu, G Fan, J Tang, ...
Nature communications 9 (1), 1-10, 2018
3672018
Root microbiota shift in rice correlates with resident time in the field and developmental stage
J Zhang, N Zhang, YX Liu, X Zhang, B Hu, Y Qin, H Xu, H Wang, X Guo, ...
Science China Life Sciences 61 (6), 613-621, 2018
2422018
Deciphering the composition and functional profile of the microbial communities in Chinese Moutai liquor starters
SH Gan, F Yang, SK Sahu, RY Luo, SL Liao, HY Wang, T Jin, L Wang, ...
Frontiers in microbiology 10, 1540, 2019
1182019
The distribution of tryptophan-dependent indole-3-acetic acid synthesis pathways in bacteria unraveled by large-scale genomic analysis
P Zhang, T Jin, S Kumar Sahu, J Xu, Q Shi, H Liu, Y Wang
Molecules 24 (7), 1411, 2019
1152019
An ATAC-seq atlas of chromatin accessibility in mouse tissues
C Liu, M Wang, X Wei, L Wu, J Xu, X Dai, J Xia, M Cheng, Y Yuan, ...
Scientific data 6 (1), 1-10, 2019
1032019
Host preference and invasiveness of commensal bacteria in the Lotus and Arabidopsis root microbiota
K Wippel, K Tao, Y Niu, R Zgadzaj, N Kiel, R Guan, E Dahms, P Zhang, ...
Nature microbiology 6 (9), 1150-1162, 2021
1002021
Taxonomic structure and functional association of foxtail millet root microbiome
T Jin, Y Wang, Y Huang, J Xu, P Zhang, N Wang, X Liu, H Chu, G Liu, ...
Gigascience, 2017
972017
EasyAmplicon: An easytouse, opensource, reproducible, and communitybased pipeline for amplicon data analysis in microbiome research
YX Liu, L Chen, T Ma, X Li, M Zheng, X Zhou, L Chen, X Qian, J Xi, H Lu, ...
iMeta 2 (1), e83, 2023
492023
Differential impact of plant secondary metabolites on the soil microbiota
V Schütz, K Frindte, J Cui, P Zhang, S Hacquard, P Schulze-Lefert, ...
Frontiers in microbiology 12, 1267, 2021
462021
Effect of caloric restriction on BMI, gut microbiota, and blood amino acid levels in non-obese adults
H Zou, D Wang, H Ren, K Cai, P Chen, C Fang, Z Shi, P Zhang, J Wang, ...
Nutrients 12 (3), 631, 2020
452020
Shared features and reciprocal complementation of the Chlamydomonas and Arabidopsis microbiota
P Durán, J Flores-Uribe, K Wippel, P Zhang, R Guan, B Melkonian, ...
Nature Communications 13 (1), 1-14, 2022
342022
Metagenomic Analysis Reveals Microbial Community Structure and Metabolic Potential for Nitrogen Acquisition in the Oligotrophic Surface Water of the Indian Ocean
Y Wang, S Liao, Y Gai, G Liu, T Jin, H Liu, L Gram, ML Strube, G Fan, ...
Frontiers in Microbiology 12, 229, 2021
282021
Cofunctioning of bacterial exometabolites drives root microbiota establishment
F Getzke, MA Hassani, M Crüsemann, M Malisic, P Zhang, Y Ishigaki, ...
Proceedings of the National Academy of Sciences 120 (15), e2221508120, 2023
252023
Deciphering the Microbial Taxonomy and Functionality of Two Diverse Mangrove Ecosystems and Their Potential Abilities To Produce Bioactive Compounds
S Liao, Y Wang, H Liu, G Fan, SK Sahu, T Jin, J Chen, P Zhang, L Gram, ...
Msystems 5 (5), e00851-19, 2020
242020
Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities
P Zhang, S Spaepen, Y Bai, S Hacquard, R Garrido-Oter
ISME Communications 1 (1), 1-3, 2021
92021
ER bodyresident myrosinases and tryptophan specialized metabolism modulate root microbiota assembly
AK Basak, A Piasecka, J Hucklenbroich, GM Türksoy, R Guan, P Zhang, ...
New Phytologist 241 (1), 329-342, 2024
32024
Chromosomal barcodes for simultaneous tracking of near-isogenic bacterial strains in plant microbiota
J Ordon, J Thouin, RT Nakano, KW Ma, P Zhang, B Huettel, ...
Nature Microbiology, 1-13, 2024
12024
Timing of root barriers controls soil-to-shoot integration of rhizosphere status
D Shen, K Wippel, S Remmel, P Zhang, N Kuertoes, U Neumann, ...
bioRxiv, 2023.04. 19.537470, 2023
2023
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