Theodore J. Perkins
Theodore J. Perkins
Ottawa Hospital Research Institute
Verified email at - Homepage
Cited by
Cited by
Strategies for cellular decision‐making
TJ Perkins, PS Swain
Molecular systems biology 5 (1), 326, 2009
Lyapunov design for safe reinforcement learning
TJ Perkins, AG Barto
Journal of Machine Learning Research 3 (Dec), 803-832, 2002
Reverse engineering the gap gene network of Drosophila melanogaster
TJ Perkins, J Jaeger, J Reinitz, L Glass
PLoS computational biology 2 (5), e51, 2006
Transcriptional dominance of Pax7 in adult myogenesis is due to high-affinity recognition of homeodomain motifs
VD Soleimani, VG Punch, Y Kawabe, AE Jones, GA Palidwor, CJ Porter, ...
Developmental cell 22 (6), 1208-1220, 2012
A general model of codon bias due to GC mutational bias
GA Palidwor, TJ Perkins, X Xia
PloS one 5 (10), e13431, 2010
A convergent form of approximate policy iteration
T Perkins, D Precup
Advances in neural information processing systems 15, 2002
Systematic Discovery of Rab GTPases with Synaptic Functions in Drosophila
CC Chan, S Scoggin, D Wang, S Cherry, T Dembo, B Greenberg, EJ Jin, ...
Current Biology 21 (20), 1704-1715, 2011
UTX inhibition as selective epigenetic therapy against TAL1-driven T-cell acute lymphoblastic leukemia
A Benyoucef, CG Palii, C Wang, CJ Porter, A Chu, F Dai, V Tremblay, ...
Genes & development 30 (5), 508-521, 2016
Noisy information processing through transcriptional regulation
E Libby, TJ Perkins, PS Swain
Proceedings of the National Academy of Sciences 104 (17), 7151-7156, 2007
Absolute quantification of transcription factors reveals principles of gene regulation in erythropoiesis
MA Gillespie, CG Palii, D Sanchez-Taltavull, P Shannon, ...
Molecular cell 78 (5), 960-974. e11, 2020
Control of glioblastoma tumorigenesis by feed-forward cytokine signaling
A Jahani-Asl, H Yin, VD Soleimani, T Haque, HA Luchman, NC Chang, ...
Nature neuroscience 19 (6), 798-806, 2016
A fluctuation method to quantify in vivo fluorescence data
N Rosenfeld, TJ Perkins, U Alon, MB Elowitz, PS Swain
Biophysical journal 91 (2), 759-766, 2006
Inferring models of gene expression dynamics
TJ Perkins, M Hallett, L Glass
Journal of theoretical biology 230 (3), 289-299, 2004
Identifying regulatory subnetworks for a set of genes
MS Scott, T Perkins, S Bunnell, F Pepin, DY Thomas, M Hallett
Molecular & Cellular Proteomics 4 (5), 683-692, 2005
Using Options for Knowledge Transfer in Reinforcement Learning
TJ Perkins, D Precup
University of Massachusetts, 1999
FiloDetect: automatic detection of filopodia from fluorescence microscopy images
S Nilufar, AA Morrow, JM Lee, TJ Perkins
BMC systems biology 7, 1-12, 2013
The HDAC3–SMARCA4–miR-27a axis promotes expression of the PAX3:FOXO1 fusion oncogene in rhabdomyosarcoma
N Bharathy, NE Berlow, E Wang, J Abraham, TP Settelmeyer, JE Hooper, ...
Science signaling 11 (557), eaau7632, 2018
Introduction to machine learning and bioinformatics
S Mitra, S Datta, T Perkins, G Michailidis
CRC Press, 2008
Trichostatin A enhances vascular repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes
CG Palii, B Vulesevic, S Fraineau, E Pranckeviciene, AJ Griffith, A Chu, ...
Cell Stem Cell 14 (5), 644-657, 2014
Estimating the stochastic bifurcation structure of cellular networks
C Song, H Phenix, V Abedi, M Scott, BP Ingalls, M Kærn, TJ Perkins
PLoS computational biology 6 (3), e1000699, 2010
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