Wataru Iwasaki

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Tsukasa FukunagaAssociate Professor, Waseda Institute for Advanced Study, Waseda UniversityVerified email at aoni.waseda.jp
Masaki MIYANatural History Museum and Institute, ChibaVerified email at chiba-muse.or.jp
Haruka OzakiBioinformatics Laboratory, Faculty of Medicine, University of TsukubaVerified email at md.tsukuba.ac.jp
Michio KondohTohoku UniversityVerified email at tohoku.ac.jp
SATO, Yukuto Ph. D.Senior Lecturer; Research Laboratory Center, Faculty of Medicine, University of the RyukyusVerified email at lab.u-ryukyu.ac.jp
Hiroki YAMANAKARyukoku UniversityVerified email at rins.ryukoku.ac.jp
Toshifumi MINAMOTOGraduate School of Human Development and Environment, Kobe UniversityVerified email at people.kobe-u.ac.jp
Hitoshi ArakiHokkaido UniversityVerified email at agr.hokudai.ac.jp
Hirohiko TakeshimaFukui Prefectural UniversityVerified email at g.fpu.ac.jp
Susumu YoshizawaAssociate Professor, Atmosphere and Ocean Research Institute), The University of Tokyo, JapanVerified email at aori.u-tokyo.ac.jp
Mutsumi NishidaVice President, University of the Ryukyus / Professor Emeritus, The University of TokyoVerified email at aori.u-tokyo.ac.jp
Sira SriswasdiResearch Affairs, Faculty of Medicine, Chulalongkorn University, Bangkok, ThailandVerified email at chula.ac.th
Satoshi HiraokaJapan Agency for Marine-Earth Science and Technology (JAMSTEC)Verified email at jamstec.go.jp
Ching-chia YANGNational Agriculture and Food Research OrganizationVerified email at affrc.go.jp
Salvatore CosentinoResearch Associate, Graduate School of Frontier Sciences, The University of TokyoVerified email at k.u-tokyo.ac.jp
edward francis delongProfessor, University of Hawaii, ManoaVerified email at hawaii.edu
Masahira HattoriRIKEN, Waseda Univ., The University of TokyoVerified email at edu.k.u-tokyo.ac.jp
Kenshiro OshimaKitasato Univ.Verified email at pharm.kitasato-u.ac.jp
Satoshi YamamotoNAROVerified email at terra.zool.kyoto-u.ac.jp
Yohei Kumagai株式会社tayoVerified email at tayo.jp

Wataru Iwasaki

Professor, Department of Integrated Biosciences, the University of Tokyo

Verified email at k.u-tokyo.ac.jp - Homepage

Bioinformatics Genome Evolution Metagenomics Environmental DNA


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MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species M Miya, Y Sato, T Fukunaga, T Sado, JY Poulsen, K Sato, T Minamoto, ... Royal Society open science 2 (7), 150088, 2015	1323	2015
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline W Iwasaki, T Fukunaga, R Isagozawa, K Yamada, Y Maeda, TP Satoh, ... Molecular biology and evolution 30 (11), 2531-2540, 2013	809	2013
MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding Y Sato, M Miya, T Fukunaga, T Sado, W Iwasaki Molecular biology and evolution 35 (6), 1553-1555, 2018	257	2018
Environmental DNA enables detection of terrestrial mammals from forest pond water M Ushio, H Fukuda, T Inoue, K Makoto, O Kishida, K Sato, K Murata, ... Molecular Ecology Resources 17 (6), e63-e75, 2017	228	2017
A fast likelihood method to reconstruct and visualize ancestral scenarios SA Ishikawa, A Zhukova, W Iwasaki, O Gascuel Molecular biology and evolution 36 (9), 2069-2085, 2019	208	2019
Generalist species drive microbial dispersion and evolution S Sriswasdi, C Yang, W Iwasaki Nature communications 8 (1), 1162, 2017	206	2017
Evolutionary origin of the Scombridae (tunas and mackerels): members of a Paleogene adaptive radiation with 14 other pelagic fish families M Miya, M Friedman, TP Satoh, H Takeshima, T Sado, W Iwasaki, ... PloS one 8 (9), e73535, 2013	199	2013
An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols T Minamoto, M Miya, T Sado, S Seino, H Doi, M Kondoh, K Nakamura, ... Environmental DNA 3 (1), 8-13, 2021	177	2021
Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria S Yoshizawa, Y Kumagai, H Kim, Y Ogura, T Hayashi, W Iwasaki, ... Proceedings of the National Academy of Sciences 111 (18), 6732-6737, 2014	171	2014
A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators DM Needham, S Yoshizawa, T Hosaka, C Poirier, CJ Choi, ... Proceedings of the National Academy of Sciences 116 (41), 20574-20583, 2019	155	2019
Metagenomics and bioinformatics in microbial ecology: current status and beyond S Hiraoka, C Yang, W Iwasaki Microbes and environments 31 (3), 204-212, 2016	139	2016
SonicParanoid: fast, accurate and easy orthology inference S Cosentino, W Iwasaki Bioinformatics 35 (1), 149-151, 2019	126	2019
CLOCK-controlled polyphonic regulation of circadian rhythms through canonical and noncanonical E-boxes H Yoshitane, H Ozaki, H Terajima, NH Du, Y Suzuki, T Fujimori, N Kosaka, ... Molecular and cellular biology 34 (10), 1776-1787, 2014	125	2014
Demonstration of the potential of environmental DNA as a tool for the detection of avian species M Ushio, K Murata, T Sado, I Nishiumi, M Takeshita, W Iwasaki, M Miya Scientific reports 8 (1), 4493, 2018	116	2018
ADARB1 catalyzes circadian A-to-I editing and regulates RNA rhythm H Terajima, H Yoshitane, H Ozaki, Y Suzuki, S Shimba, S Kuroda, ... Nature genetics 49 (1), 146-151, 2017	99	2017
Somatic primary piRNA biogenesis driven by cis-acting RNA elements and trans-acting Yb H Ishizu, YW Iwasaki, S Hirakata, H Ozaki, W Iwasaki, H Siomi, MC Siomi Cell reports 12 (3), 429-440, 2015	90	2015
Functional D-box sequences reset the circadian clock and drive mRNA rhythms H Yoshitane, Y Asano, A Sagami, S Sakai, Y Suzuki, H Okamura, ... Communications Biology 2 (1), 300, 2019	85	2019
CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data T Fukunaga, H Ozaki, G Terai, K Asai, W Iwasaki, H Kiryu Genome biology 15, 1-15, 2014	81	2014
Methylocaldum marinum sp. nov., a thermotolerant, methane-oxidizing bacterium isolated from marine sediments, and emended description of the genus Methylocaldum M Takeuchi, Y Kamagata, K Oshima, S Hanada, H Tamaki, K Marumo, ... International Journal of systematic and evolutionary microbiology 64 (Pt_9 …, 2014	80	2014
From β- to α-Proteobacteria: The Origin and Evolution of Rhizobial Nodulation Genes nodIJ S Aoki, M Ito, W Iwasaki Molecular biology and evolution 30 (11), 2494-2508, 2013	76	2013

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